David! Alignement is easy, remove panel above viser, ones you remove motor, install cables make sure the are nice and flat, also make sure sunroof is in proper closed position, now make sure when reinserting motor the cables have same tension, before any thing after installing motor, adjust micro switch so it is in the first "Click" position, now trye it, you may need to reudjust microswitch, but do NOT reinstall the vinal which covers your motor and micro switch tuill you tryed to open and close a couple times and it works.